OK, to make a long story short....I have a VEMS V3 ECU running a 40v V8 in my 4kq. Was running fine for about a year then I started noticing my variable intake runners werent swtitching(has 2 that are controlled by steppers). Then a few months ago while on my way home from my parents house the car died. The digidash was still on but the VEMS LCD was off. Found the 5 amp ECU fuse blown. Put in another and it instantly blew like there was a short to ground. Then I put in a 10 amp fuse(no more 5 amp) and it didnt blow. Car started up fine and i drove home. Ever since then the VEMS ECU will shut off by itself after 30-45 minutes of run time. I disconnected the power to the intake manifold vacuum switches that are controlled by the steppers(steppers are inverted to control the ground side) and the problem still occurs. I verified that when the ECU shuts off it still has 12v to it. Ground is good. Also, after the ECU shuts off by itself I can instantly restart it and it will run for a few seconds and then shut off again but if i let it sit for a few minutes it wont shut off for another 20 minutes or so whick leads me to believe it may be something getting hot and or building up resistance and causing the ECU to shut off.
Yeterday I was at derracudas house with the car and started poking around. Found the ground wire from the ecu to one of the intake cavuum swtiches to be open. Checked for shorts and found none in any of the ECU wiring. I still need to do a little more checking, but before I drove home(vacation home

) I disabled both steppers. I drove the car about 25 minutes and then let it sit and idle for another 15 and the ECU did not shut off by itself. Thils leads me to believe it has something to do with the steppers.
My question is, is there anything i can do to check the steppers? maybe open up the ECU and look for something burnt or melted or discolored? Any help on this would be welcomed. Thanks.